msigdb_get_features

msigdb_get_features#

mofaflex.tl.msigdb_get_features(category='h.all', dbver='2024.1.Hs', entrez=False)#

Get gene sets from the MSIGDB molecular signatures database.

Parameters:

  • category (str (default: 'h.all')) – An MSIGDB category. Can be obtained by calling msigdb_list_categories().

  • dbver (str (default: '2024.1.Hs')) – MSIGDB version. Can be obtained by calling msigdb_list_versions().

  • entrez (bool (default: False)) – Whether to use Entrez identifiers or common gene names.

Return type:

FeatureSets