Core

DataOptions(*[, group_by, layer, ...])	Options for the data.
ModelOptions(*[, n_factors, weight_prior, ...])	Options for the model.
TrainingOptions(*[, device, batch_size, ...])	Options for training.
SmoothOptions(*[, n_inducing, kernel, ...])	Options for Gaussian processes.
MOFAFLEX(data, *args)	Fit the model using the provided data.
FeatureSet(features, name[, description])	Class for storing a single set of features (genes).
FeatureSets(feature_sets[, name, remove_empty])	Class for storing a collection of feature sets (see FeatureSet).

Presets

Presets corresponding to different previously published factor analysis models.

These can be used by passing them to the MOFAFLEX constructor: MOFAFLEX(*preset).

mofaflex.presets.MOFA

Options used to reproduce MOFA results in the MOFA-FLEX paper.

mofaflex.presets.MEFISTO

Options used to reproduce MEFISTO results in the MOFA-FLEX paper.

mofaflex.presets.NSF

Options used to reproduce NSF results in the MOFA-FLEX paper.

Settings

An instance of the _core.settings.Settings is available as mofaflex.settings and allows configuring MOFA-FLEX.

_core.settings.Settings(*[, use_dask, ...])

Global settings.