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mofaflex

  • Getting started with MOFA-FLEX
  • Tutorials
    • MOFA-FLEX for MOFA users
    • Incorporating prior domain knowledge
    • Incorporating prior knowledge in a multi-omic multi-group setting
    • Joint analysis of spatial and single-cell RNA-seq data with prior domain knowledge
  • The MOFA-FLEX model
  • API
    • mofaflex.MOFAFLEX
    • mofaflex.FeatureSet
    • mofaflex.FeatureSets
    • mofaflex.terms
      • mofaflex.terms.MofaFlex
    • mofaflex.priors
      • mofaflex.priors.Constant
      • mofaflex.priors.GSFA
      • mofaflex.priors.GaussianProcess
      • mofaflex.priors.Horseshoe
      • mofaflex.priors.InformedHorseshoe
      • mofaflex.priors.Laplace
      • mofaflex.priors.Normal
      • mofaflex.priors.SpikeSlab
    • mofaflex.likelihoods
      • mofaflex.likelihoods.Bernoulli
      • mofaflex.likelihoods.NegativeBinomial
      • mofaflex.likelihoods.Normal
    • mofaflex._core.settings.Settings
    • mofaflex.tl
      • mofaflex.tl.factor_correlation
      • mofaflex.tl.get_free_gpu_idx
      • mofaflex.tl.match
      • mofaflex.tl.msigdb_get_features
      • mofaflex.tl.msigdb_list_categories
      • mofaflex.tl.msigdb_list_versions
      • mofaflex.tl.test_annotation_significance
      • mofaflex.tl.DataGenerator
    • mofaflex.pl
      • mofaflex.pl.all_weights
      • mofaflex.pl.covariates_factor_scatter
      • mofaflex.pl.covariates_weight_scatter
      • mofaflex.pl.factor
      • mofaflex.pl.factor_correlation
      • mofaflex.pl.factor_gp_covariates
      • mofaflex.pl.factor_gp_smoothness
      • mofaflex.pl.factor_significance
      • mofaflex.pl.factor_sparsity_histogram
      • mofaflex.pl.factors_covariate
      • mofaflex.pl.factors_scatter
      • mofaflex.pl.overview
      • mofaflex.pl.top_weights
      • mofaflex.pl.training_curve
      • mofaflex.pl.variance_explained
      • mofaflex.pl.weight_gp_covariates
      • mofaflex.pl.weight_gp_smoothness
      • mofaflex.pl.weight_sparsity_histogram
      • mofaflex.pl.weights
      • mofaflex.pl.weights_covariate
  • Changelog
  • Contributing guide
  • References
  • .md

Tutorials

Tutorials#

  • MOFA-FLEX for MOFA users
  • Incorporating prior domain knowledge
  • Incorporating prior knowledge in a multi-omic multi-group setting
  • Joint analysis of spatial and single-cell RNA-seq data with prior domain knowledge

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Getting started with MOFA-FLEX

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MOFA-FLEX for MOFA users

By Arber Qoku , Florin Walter , Ilia Kats , Martin Rohbeck

© Copyright 2026, Arber Qoku <arber.qoku@dkfz.de>, Florin Walter <florin.walter@dkfz.de>, Ilia Kats <i.kats@dkfz.de>, Martin Rohbeck <martin.rohbeck@dkfz.de>..