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Getting started with MOFA-FLEX
Tutorials
MOFA-FLEX for MOFA users
Incorporating prior domain knowledge
Incorporating prior knowledge in a multi-omic multi-group setting
Joint analysis of spatial and single-cell RNA-seq data with prior domain knowledge
The MOFA-FLEX model
API
mofaflex.MOFAFLEX
mofaflex.FeatureSet
mofaflex.FeatureSets
mofaflex.terms
mofaflex.terms.MofaFlex
mofaflex.priors
mofaflex.priors.Constant
mofaflex.priors.GSFA
mofaflex.priors.GaussianProcess
mofaflex.priors.Horseshoe
mofaflex.priors.InformedHorseshoe
mofaflex.priors.Laplace
mofaflex.priors.Normal
mofaflex.priors.SpikeSlab
mofaflex.likelihoods
mofaflex.likelihoods.Bernoulli
mofaflex.likelihoods.NegativeBinomial
mofaflex.likelihoods.Normal
mofaflex._core.settings.Settings
mofaflex.tl
mofaflex.tl.factor_correlation
mofaflex.tl.get_free_gpu_idx
mofaflex.tl.match
mofaflex.tl.msigdb_get_features
mofaflex.tl.msigdb_list_categories
mofaflex.tl.msigdb_list_versions
mofaflex.tl.test_annotation_significance
mofaflex.tl.DataGenerator
mofaflex.pl
mofaflex.pl.all_weights
mofaflex.pl.covariates_factor_scatter
mofaflex.pl.covariates_weight_scatter
mofaflex.pl.factor
mofaflex.pl.factor_correlation
mofaflex.pl.factor_gp_covariates
mofaflex.pl.factor_gp_smoothness
mofaflex.pl.factor_significance
mofaflex.pl.factor_sparsity_histogram
mofaflex.pl.factors_covariate
mofaflex.pl.factors_scatter
mofaflex.pl.overview
mofaflex.pl.top_weights
mofaflex.pl.training_curve
mofaflex.pl.variance_explained
mofaflex.pl.weight_gp_covariates
mofaflex.pl.weight_gp_smoothness
mofaflex.pl.weight_sparsity_histogram
mofaflex.pl.weights
mofaflex.pl.weights_covariate
Changelog
Contributing guide
References
.rst
.pdf
mofaflex.priors.Horseshoe
Contents
Horseshoe
mofaflex.priors.Horseshoe
#
class
mofaflex.priors.
Horseshoe
#
Horseshoe sparsity-inducing prior.
Contents
Horseshoe