mofaflex.pl.factors_scatter

mofaflex.pl.factors_scatter#

mofaflex.pl.factors_scatter(model, x, y, groups=None, color=None, shape=None, data=None, size=2, alpha=1, figsize=None, nrow=None, ncol=None)#

Plot two factors against each other and color by covariates.

Parameters:

  • model (MofaFlex | MOFAFLEX) – The term to plot the factor correlation for. Can also be a MOFAFLEX object if it has only one term.

  • x (int | str) – The factor to plot on the x-axis.

  • y (int | str) – The factor to plot on the y-axis. only one additive term.

  • groups (str | Sequence[str] | None (default: None)) – The groups to plot. If None, all groups are shown.

  • color (str | None (default: None)) – The covariate name to color by.

  • shape (str | None (default: None)) – The covariate name to shape by.

  • data (MuData | Mapping[str, Mapping[str, AnnData]] | AnnData | None (default: None)) – The data that the model was trained on. Only required if color is not None or shape is not None.

  • size (float (default: 2)) – Size of the data points.

  • alpha (float (default: 1)) – Transparency of the data points.

  • figsize (tuple[float, float] | None (default: None)) – Figure size in inches.

  • nrow (int | None (default: None)) – Number of rows in the faceted plot. If None, plotnine will determine automatically.

  • ncol (int | None (default: None)) – Number of columns in the faceted plot. If None, plotnine will determine automatically.

Return type:

plotnine.ggplot