Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

0.1.2

Fixed

• Using a MuData .obs column as a guiding variable now works.

• When using guiding variables together with annotations, the data frame returned by get_annotations now has a correct row index.

• Compatibility with Pandas 3.

• Using independent lengthscales in the GP prior now works.

0.1.1

Added

• tl.factor_correlation to calculate the correlation between factors

Fixed

• Gaussian processes with dynamic time warping and a custom reference group now actually use the the set reference group instead of the first warped group as reference.

• The PCGSE test now also works if only a single annotated factor is present.

Changed

• pl.factor now also accepts factor names for the factor argument.

• FeatureSets.filter now has better defaults (based on extensive benchmarking).

Deprecated

• The MOFA compatibility mode for saving a trained model.

0.1.0

• Initial release