mofaflex.SmoothOptions

class mofaflex.SmoothOptions(*, n_inducing=100, kernel='RBF', mefisto_kernel=True, independent_lengthscales=False, group_covar_rank=1, warp_groups=<factory>, warp_interval=20, warp_open_begin=True, warp_open_end=True, warp_reference_group=None)

Options for Gaussian processes.

Attributes table

group_covar_rank	Rank of the group correlation matrix.
independent_lengthscales	Whether to use a separate lengthscale per covariate dimension.
kernel	Kernel function to use.
mefisto_kernel	Whether to use the MEFISTO group covariance kernel or treat groups independently.
n_inducing	Number of inducing points.
warp_interval	Apply dynamic time warping every warp_interval epochs.
warp_open_begin	Perform open-ended alignment.
warp_open_end	Perform open-ended alignment.
warp_reference_group	Reference group to align the others to.
warp_groups	List of groups to apply dynamic time warping to.

Methods table

Attributes

SmoothOptions.group_covar_rank: int = 1

Rank of the group correlation matrix. Only relevant if mefisto_kernel=True.

SmoothOptions.independent_lengthscales: bool = False

Whether to use a separate lengthscale per covariate dimension.

SmoothOptions.kernel: Literal['RBF', 'Matern'] = 'RBF'

Kernel function to use.

SmoothOptions.mefisto_kernel: bool = True

Whether to use the MEFISTO group covariance kernel or treat groups independently.

SmoothOptions.n_inducing: int = 100

Number of inducing points.

SmoothOptions.warp_interval: int = 20

Apply dynamic time warping every warp_interval epochs.

SmoothOptions.warp_open_begin: bool = True

Perform open-ended alignment.

SmoothOptions.warp_open_end: bool = True

Perform open-ended alignment.

SmoothOptions.warp_reference_group: str | None = None

Reference group to align the others to. Defaults to the first group of warp_groups.

SmoothOptions.warp_groups: Sequence[str] = <dataclasses._MISSING_TYPE object>

List of groups to apply dynamic time warping to.

Methods